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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
61
ChIP-seq
20
DNase-seq
6
ATAC-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
61
DNA binding
26
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
45
August, 2017
23
October, 2018
19
June, 2019
12
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
448
bam
431
bigWig
402
tsv
32
fastq
31
bed narrowPeak
28
bigBed narrowPeak
21
bed broadPeak
20
bed bed3+
20
bigBed broadPeak
8
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
497
Homo sapiens
Biosample type
495
tissue
2
primary cell
1
in vitro differentiated cells
Organ
892
pancreas
778
liver
667
connective tissue
503
epithelium
479
adipose tissue
393
heart
354
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
498
AMP
Genome assembly (visualization)
432
hg19
430
GRCh38
Lab
498
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
498 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
2
1
1
renal pelvis
10
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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