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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
ChIP-seq
34
DNase-seq
17
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
Assay category
231
DNA binding
40
DNA accessibility
24
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
198
histone
198
histone modification
122
narrow histone mark
76
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
107
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
12
October, 2017
4
March, 2020
2
November, 2018
1
February, 2023
Available data
260
bam
234
bigWig
213
bed narrowPeak
137
bigBed narrowPeak
114
tagAlign
49
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
27
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
305
Homo sapiens
Biosample type
262
tissue
43
primary cell
Organ
892
pancreas
778
liver
667
connective tissue
503
epithelium
479
adipose tissue
393
heart
354
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
305
AMP
Genome assembly (visualization)
226
GRCh38
178
hg19
Lab
305
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
skeleton
BIOSAMPLE
ASSAY
305 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
RRBS
tissue
brain
16
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 78 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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