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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
Assay category
84
DNA binding
Target of assay
54
histone
54
histone modification
30
transcription factor
29
narrow histone mark
25
broad histone mark
1
RNA binding protein
1
chromatin remodeller
1
recombinant protein
Date released
39
August, 2017
32
September, 2018
7
November, 2017
4
October, 2017
1
December, 2017
1
November, 2018
Available data
84
fastq
83
bam
81
bigWig
43
bed narrowPeak
14
bed bed3+
10
bigBed narrowPeak
4
tagAlign
2
bed broadPeak
Organism
84
Homo sapiens
Biosample type
44
primary cell
26
tissue
8
cell line
6
in vitro differentiated cells
Organ
54
pancreas
21
epithelium
17
connective tissue
12
adipose tissue
8
liver
4
brain
1
embryo
Project
84
AMP
Genome assembly (visualization)
81
hg19
75
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
84
missing controlled_by
Audit category:
6
inconsistent control run_type
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
lab.title!
Klaus Kaestner, Upenn
lab.title!!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
tissue
white adipose tissue
12
islet of Langerhans
10
brain
4
cell line
HepG2
8
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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