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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
Assay category
58
DNA binding
Target of assay
53
histone
53
histone modification
30
transcription factor
28
narrow histone mark
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
29
August, 2017
15
September, 2018
10
November, 2017
3
November, 2018
1
October, 2017
Available data
58
bam
58
fastq
57
bigWig
29
bed narrowPeak
13
bed bed3+
13
bigBed narrowPeak
1
bed broadPeak
1
tagAlign
Organism
58
Homo sapiens
Biosample type
23
primary cell
22
tissue
13
cell line
in vitro differentiated cells
Organ
32
pancreas
13
liver
12
adipose tissue
12
connective tissue
11
epithelium
1
brain
Project
58
AMP
Genome assembly (visualization)
57
hg19
50
GRCh38
Lab
58
AMP-T2D consortium
Audit category:
58
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed broadPeak
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
pancreatic acinar cell
4
tissue
white adipose tissue
12
islet of Langerhans
9
brain
1
cell line
HepG2
13
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