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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
Assay category
53
DNA binding
Target of assay
35
transcription factor
33
histone
33
histone modification
18
narrow histone mark
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
34
August, 2017
10
November, 2017
4
September, 2018
3
November, 2018
1
December, 2017
1
October, 2017
Available data
53
bam
53
fastq
51
bigWig
18
bed narrowPeak
13
bed bed3+
13
bigBed narrowPeak
1
bed broadPeak
1
tagAlign
Organism
53
Homo sapiens
Biosample type
22
tissue
13
cell line
12
primary cell
6
in vitro differentiated cells
Organ
32
pancreas
17
connective tissue
13
liver
12
adipose tissue
epithelium
1
brain
1
embryo
Project
53
AMP
Genome assembly (visualization)
51
hg19
44
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
53
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
biosample_type!
stem cell
files.file_type!
hic
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
tissue
white adipose tissue
12
islet of Langerhans
9
brain
1
cell line
HepG2
13
primary cell
pancreatic endocrine cell
12
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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