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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
Assay category
48
DNA binding
Target of assay
36
histone
36
histone modification
19
broad histone mark
17
narrow histone mark
12
transcription factor
6
chromatin remodeller
2
RNA binding protein
1
recombinant protein
Date released
August, 2017
32
September, 2018
10
November, 2017
3
November, 2018
2
October, 2017
1
December, 2017
Available data
50
fastq
49
bam
47
bed narrowPeak
47
bigWig
15
bigBed narrowPeak
4
tagAlign
bed broadPeak
Organism
48
Homo sapiens
Biosample type
32
primary cell
13
cell line
2
tissue
1
in vitro differentiated cells
Organ
32
pancreas
21
epithelium
13
liver
2
brain
1
embryo
Project
48
AMP
Genome assembly (visualization)
45
hg19
38
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
48
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
files.file_type!
bed broadPeak
month_released!
August, 2017
February, 2018
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ChIP-seq
primary cell
pancreatic ductal cell
13
pancreatic endocrine cell
11
pancreatic acinar cell
8
cell line
HepG2
13
tissue
brain
2
in vitro differentiated cells
pancreatic endoderm
1
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