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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
Assay category
57
DNA binding
Target of assay
50
histone
50
histone modification
35
transcription factor
narrow histone mark
22
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
28
August, 2017
17
September, 2018
9
November, 2017
3
November, 2018
Available data
60
fastq
59
bam
58
bigWig
30
bed narrowPeak
13
bigBed narrowPeak
11
bed bed3+
tagAlign
1
bed broadPeak
Organism
57
Homo sapiens
Biosample type
21
primary cell
19
tissue
12
cell line
5
in vitro differentiated cells
Organ
28
pancreas
17
connective tissue
12
adipose tissue
12
liver
10
epithelium
Project
57
AMP
Genome assembly (visualization)
56
hg19
49
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
57
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
files.file_type!
tagAlign
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
11
pancreatic ductal cell
6
pancreatic acinar cell
4
tissue
white adipose tissue
12
islet of Langerhans
7
cell line
HepG2
12
in vitro differentiated cells
adipocyte
5
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