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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
Assay category
61
DNA binding
Target of assay
35
transcription factor
29
histone
29
histone modification
17
narrow histone mark
12
broad histone mark
6
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
38
August, 2017
11
September, 2018
8
November, 2017
3
November, 2018
1
December, 2017
Available data
65
fastq
64
bam
62
bigWig
25
bed narrowPeak
13
bed bed3+
13
bigBed narrowPeak
tagAlign
2
bed broadPeak
Organism
61
Homo sapiens
Biosample type
23
primary cell
21
tissue
11
cell line
6
in vitro differentiated cells
Organ
53
pancreas
epithelium
17
connective tissue
12
adipose tissue
11
liver
1
embryo
Project
61
AMP
Genome assembly (visualization)
59
hg19
53
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
61
missing controlled_by
Audit category:
4
inconsistent control run_type
3
inconsistent control read length
files.file_type!
tagAlign
organ_slims!
epithelium
vasculature
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
tissue
white adipose tissue
12
islet of Langerhans
9
cell line
HepG2
11
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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