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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
Assay category
32
DNA binding
Target of assay
29
transcription factor
6
chromatin remodeller
6
histone
6
histone modification
broad histone mark
3
narrow histone mark
2
RNA binding protein
1
recombinant protein
Date released
17
August, 2017
10
November, 2017
3
November, 2018
1
December, 2017
1
October, 2017
Available data
32
bam
32
fastq
30
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3+
1
bed broadPeak
1
tagAlign
Organism
32
Homo sapiens
Biosample type
13
cell line
13
tissue
6
in vitro differentiated cells
Organ
pancreas
17
connective tissue
13
liver
12
adipose tissue
11
epithelium
1
brain
1
embryo
Project
32
AMP
Genome assembly (visualization)
30
hg19
23
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
32
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
lab.title!
Anna Gloyn, Oxford
organ_slims!
limb
pancreas
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
32 results
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Clear Filters
ChIP-seq
cell line
HepG2
13
tissue
white adipose tissue
12
brain
1
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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