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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
Assay category
57
DNA binding
Target of assay
54
histone
54
histone modification
32
transcription factor
narrow histone mark
25
broad histone mark
4
chromatin remodeller
3
RNA binding protein
Date released
28
August, 2017
17
September, 2018
9
November, 2017
November, 2018
3
October, 2017
Available data
57
fastq
56
bam
56
bigWig
28
bed narrowPeak
11
bed bed3+
11
bigBed narrowPeak
3
tagAlign
1
bed broadPeak
Organism
57
Homo sapiens
Biosample type
22
tissue
21
primary cell
9
cell line
5
in vitro differentiated cells
Organ
28
pancreas
17
connective tissue
12
adipose tissue
10
epithelium
9
liver
3
brain
Project
57
AMP
Genome assembly (visualization)
56
hg19
49
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
57
missing controlled_by
Audit category:
4
inconsistent control run_type
3
inconsistent control read length
lab.title!
Katalin Susztak, Upenn
month_released!
August, 2021
November, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ChIP-seq
tissue
white adipose tissue
12
islet of Langerhans
7
brain
3
primary cell
pancreatic endocrine cell
11
pancreatic ductal cell
6
pancreatic acinar cell
4
cell line
HepG2
9
in vitro differentiated cells
adipocyte
5
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