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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
Assay category
86
DNA binding
Target of assay
54
histone
54
histone modification
35
transcription factor
29
narrow histone mark
25
broad histone mark
6
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
38
August, 2017
32
September, 2018
8
November, 2017
4
October, 2017
3
November, 2018
1
December, 2017
Available data
86
fastq
85
bam
83
bigWig
46
bed narrowPeak
13
bed bed3+
13
bigBed narrowPeak
4
tagAlign
2
bed broadPeak
Organism
86
Homo sapiens
Biosample type
44
primary cell
25
tissue
11
cell line
6
in vitro differentiated cells
Organ
53
pancreas
21
epithelium
17
connective tissue
12
adipose tissue
11
liver
4
brain
1
embryo
Project
86
AMP
Genome assembly (visualization)
83
hg19
77
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
86
missing controlled_by
Audit category:
4
inconsistent control run_type
3
inconsistent control read length
lab.title!
Maike Sander, UCSD
month_released!
April, 2020
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
tissue
white adipose tissue
12
islet of Langerhans
9
brain
4
cell line
HepG2
11
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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