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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
17
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
7
control
6
transcription factor
4
histone
4
histone modification
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
9
November, 2018
7
December, 2018
January, 2019
4
October, 2019
2
March, 2020
1
October, 2017
Available data
17
bam
17
fastq
10
bigWig
8
bed narrowPeak
7
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
23
Homo sapiens
Biosample type
23
tissue
Organ
944
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
10
GRCh38
8
hg19
Lab
23
AMP-T2D consortium
audit.WARNING.category!
inconsistent assembly
month_released!
January, 2019
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
WGBS
pCHi-C
ATAC-seq
DNase-seq
tissue
spleen
13
2
1
1
1
islet of Langerhans
4
ovary
1
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