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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
ChIP-seq
27
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
392
DNA binding
52
DNA accessibility
Target of assay
322
transcription factor
80
recombinant protein
65
histone
65
histone modification
64
RNA binding protein
33
narrow histone mark
32
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
230
November, 2017
51
November, 2018
42
June, 2019
27
December, 2018
23
October, 2019
18
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1417
bam
1325
bigWig
921
fastq
773
bed narrowPeak
521
tsv
444
bigBed narrowPeak
153
zippedFastqFolder
148
tagAlign
84
bed broadPeak
84
bigBed broadPeak
49
bed bed3+
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
4
tar
4
txt
3
cool
2
csv
2
ibed
1
hdf5
1
vcf
Organism
444
Homo sapiens
Biosample type
tissue
331
cell line
96
primary cell
17
in vitro differentiated cells
Organ
285
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
brain
9
musculature of body
6
heart
3
eye
Project
444
AMP
Genome assembly (visualization)
433
hg19
408
GRCh38
Lab
444
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
9
inconsistent control run_type
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
inconsistent control read length
biosample_type!
tissue
organ_slims!
brain
BIOSAMPLE
ASSAY
444 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
269
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
12
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 19 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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