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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
42
ChIP-seq
17
pCHi-C
11
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
Assay category
285
Transcription
87
DNA accessibility
42
DNA binding
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
broad histone mark
42
narrow histone mark
Date released
108
May, 2021
57
February, 2023
54
May, 2022
47
September, 2023
45
May, 2020
40
September, 2020
39
February, 2021
19
April, 2020
16
January, 2021
4
March, 2020
3
March, 2023
Available data
138
bam
138
bigWig
100
fastq
96
tsv
73
zippedFastqFolder
42
bed narrowPeak
40
tagAlign
1
hic
Organism
429
Homo sapiens
Biosample type
333
primary cell
97
tissue
cell line
2
stem cell
Organ
182
pancreas
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
191
T1D
172
HPAP
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
139
GRCh38
138
hg19
Lab
187
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
award.project!
AMP
biosample_type!
cell line
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
432 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
pCHi-C
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
primary cell
Langerhans cell
85
48
monocyte
53
40
1
exocrine cell
39
peripheral blood mononuclear cell
8
B cell
2
1
+ See 34 more…
tissue
kidney
47
islet of Langerhans
7
6
2
11
lung
9
10
pancreas
4
thymus
1
stem cell
SB Ad3.1
1
1
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