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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
112
ChIP-seq
2
ATAC-seq
Assay category
198
DNA accessibility
112
DNA binding
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
38
August, 2017
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
3003
bam
2826
bigWig
1601
bed narrowPeak
1469
tsv
1126
fastq
949
bigBed narrowPeak
356
tagAlign
310
bed broadPeak
274
bigBed broadPeak
238
bed bed3+
154
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
19
hic
16
bedpe bed3+
7
csv
4
hdf5
4
tar
3
bed bed3
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
305
Homo sapiens
Biosample type
203
tissue
59
cell line
48
primary cell
in vitro differentiated cells
Organ
78
kidney
60
liver
46
musculature of body
45
brain
36
limb
30
heart
22
epithelium
18
pancreas
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
Project
310
AMP
Genome assembly (visualization)
286
hg19
270
GRCh38
Lab
308
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
November, 2018
organ_slims!
skeleton
BIOSAMPLE
ASSAY
310 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
12
3
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
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