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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
660
ChIP-seq
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
660
DNA binding
189
DNA accessibility
Target of assay
395
transcription factor
343
histone
343
histone modification
220
broad histone mark
123
narrow histone mark
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
274
November, 2017
163
June, 2019
89
May, 2019
61
April, 2019
57
October, 2019
52
November, 2018
46
December, 2017
34
October, 2018
28
December, 2018
22
August, 2017
15
January, 2019
6
October, 2017
2
July, 2019
Available data
2689
bam
2458
bigWig
1426
bed narrowPeak
1330
tsv
864
fastq
849
bigBed narrowPeak
297
tagAlign
268
bed broadPeak
233
bed bed3+
232
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
2
ibed
2
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
844
Homo sapiens
Biosample type
540
tissue
294
cell line
primary cell
15
in vitro differentiated cells
Organ
301
liver
116
brain
88
kidney
84
limb
83
heart
62
pancreas
59
blood vessel
59
vasculature
44
blood
44
bodily fluid
38
musculature of body
26
nerve
24
artery
18
ureter
13
epithelium
13
spleen
8
connective tissue
5
adipose tissue
3
eye
Project
849
AMP
Genome assembly (visualization)
813
GRCh38
778
hg19
Lab
849
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
24
inconsistent control read length
5
inconsistent control run_type
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
biosample_type!
primary cell
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
849 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
37
2
kidney
18
13
1
heart left ventricle
25
3
tibial nerve
24
2
body of pancreas
21
4
+ See 53 more…
cell line
HepG2
242
GM12878
44
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
12
adipocyte
1
2
See all biosamples
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