Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
ChIP-seq
104
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
411
DNA binding
104
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
19
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
January, 2018
Available data
582
bam
520
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
1
vcf
Organism
520
Homo sapiens
Biosample type
1769
tissue
520
cell line
396
primary cell
250
in vitro differentiated cells
2
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
pancreas
54
blood
54
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
516
AMP
4
T1D
Genome assembly (visualization)
515
hg19
453
GRCh38
Lab
506
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
month_released!
January, 2018
BIOSAMPLE
ASSAY
520 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
2
H1-hESC
8
+ See 7 more…
See all biosamples
Download