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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
DNase-seq
20
ChIP-seq
Assay category
29
DNA accessibility
20
DNA binding
Target of assay
15
histone
15
histone modification
8
narrow histone mark
7
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
14
August, 2017
6
November, 2017
4
October, 2019
1
November, 2020
Available data
898
bam
870
bigWig
548
fastq
425
bed narrowPeak
401
tsv
153
zippedFastqFolder
139
tagAlign
124
bigBed narrowPeak
62
bed bed3+
49
bed broadPeak
49
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
49
Homo sapiens
Biosample type
212
tissue
59
cell line
48
primary cell
1
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
7
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
49
AMP
Genome assembly (visualization)
45
GRCh38
42
hg19
Lab
49
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
49 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
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