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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
21
ATAC-seq
1
DNase-seq
Assay category
108
DNA binding
22
DNA accessibility
Target of assay
77
histone
77
histone modification
39
narrow histone mark
37
broad histone mark
31
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
43
August, 2017
34
December, 2017
25
August, 2021
16
February, 2018
5
November, 2019
3
May, 2021
2
February, 2023
2
October, 2019
Available data
288
bam
257
bigWig
141
fastq
131
tsv
130
bed narrowPeak
37
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
130
Homo sapiens
Biosample type
861
tissue
389
cell line
227
primary cell
130
in vitro differentiated cells
2
stem cell
Organ
45
connective tissue
18
epithelium
14
embryo
14
liver
pancreas
Project
130
AMP
Genome assembly (visualization)
129
hg19
126
GRCh38
Lab
126
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
17
inconsistent control read length
audit.WARNING.category!
inconsistent assembly
organ_slims!
pancreas
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
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