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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
single cell RNA-seq
39
total RNA-seq
27
snATAC-seq
22
ChIP-seq
1
DNase-seq
1
RRBS
Assay category
98
Transcription
28
DNA accessibility
22
DNA binding
1
DNA methylation
Target of assay
13
histone
13
histone modification
8
narrow histone mark
5
RNA binding protein
5
broad histone mark
5
transcription factor
4
control
1
chromatin remodeller
Date released
39
February, 2021
39
February, 2023
22
September, 2020
15
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
2
June, 2018
1
November, 2018
1
September, 2018
Available data
419
bigWig
413
bam
225
bed narrowPeak
162
tsv
149
fastq
99
tagAlign
85
bigBed narrowPeak
73
zippedFastqFolder
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
149
Homo sapiens
Biosample type
427
cell line
164
tissue
149
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
pancreas
238
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
100
HPAP
49
AMP
Genome assembly (visualization)
47
hg19
40
GRCh38
Lab
100
Klaus Kaestner, Upenn
49
AMP-T2D consortium
Audit category:
27
audit script error
2
inconsistent ontology term
Audit category:
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
month_released!
April, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
149 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
DNase-seq
RRBS
primary cell
Langerhans cell
34
27
exocrine cell
39
skeletal muscle myoblast
13
1
1
pancreatic cell
9
mesenchymal cell
6
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