Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
ChIP-seq
200
total RNA-seq
187
single cell RNA-seq
100
ATAC-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
389
Transcription
260
DNA binding
185
DNA accessibility
58
DNA methylation
8
3D chromatin structure
Target of assay
220
histone
220
histone modification
112
broad histone mark
108
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
506
bigWig
497
bam
407
fastq
280
bed narrowPeak
225
tsv
153
zippedFastqFolder
99
tagAlign
94
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
917
Homo sapiens
Biosample type
2579
tissue
917
primary cell
654
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
433
AMP
324
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
519
hg19
477
GRCh38
Lab
398
AMP-T2D consortium
324
Klaus Kaestner, Upenn
194
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
May, 2020
organ_slims!
vein
BIOSAMPLE
ASSAY
917 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
52
13
1
1
pancreatic alpha cell
13
52
12
35
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
12
23
16
1
exocrine cell
39
+ See 72 more…
See all biosamples
Download