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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
Assay category
232
DNA binding
Target of assay
232
histone
232
histone modification
121
broad histone mark
111
narrow histone mark
32
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
118
May, 2021
36
August, 2017
32
September, 2018
21
October, 2019
19
June, 2019
3
August, 2021
3
May, 2019
November, 2017
Available data
225
bigWig
211
bed narrowPeak
198
bam
97
tagAlign
68
fastq
42
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
3
bed bed3+
Organism
232
Homo sapiens
Biosample type
556
tissue
232
primary cell
112
in vitro differentiated cells
23
cell line
2
stem cell
Organ
64
epithelium
58
pancreas
15
blood vessel
15
vasculature
15
vein
10
kidney
8
connective tissue
8
musculature of body
3
liver
2
heart
1
eye
Project
148
AMP
84
T1D
Genome assembly (visualization)
225
hg19
193
GRCh38
Lab
118
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
month_released!
February, 2023
November, 2017
BIOSAMPLE
ASSAY
232 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
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