Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
ChIP-seq
216
total RNA-seq
186
ATAC-seq
186
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
403
Transcription
271
DNA accessibility
240
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
201
histone
201
histone modification
104
broad histone mark
97
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
47
June, 2019
43
April, 2018
34
October, 2019
24
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
527
bigWig
521
bam
334
fastq
241
bed narrowPeak
238
tsv
153
zippedFastqFolder
99
tagAlign
87
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
998
Homo sapiens
Biosample type
1975
tissue
998
primary cell
595
cell line
392
in vitro differentiated cells
10
stem cell
Organ
345
epithelium
274
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
5
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
469
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
542
hg19
450
GRCh38
Lab
434
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
month_released!
September, 2018
organ_slims!
adipose tissue
heart
BIOSAMPLE
ASSAY
998 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
42
32
12
31
1
pancreatic beta cell
13
11
19
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 88 more…
See all biosamples
Download