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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
Assay category
114
DNA binding
Target of assay
235
histone
235
histone modification
121
broad histone mark
114
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
21
August, 2017
15
September, 2018
11
June, 2019
9
October, 2019
3
November, 2017
2
August, 2021
1
May, 2019
Available data
111
bigWig
103
bed narrowPeak
102
bam
47
tagAlign
39
fastq
25
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
114
Homo sapiens
Biosample type
324
tissue
114
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
35
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
74
AMP
40
T1D
Genome assembly (visualization)
111
hg19
101
GRCh38
Lab
64
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
target.investigated_as!
other context
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
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