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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
222
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
1
GRO-seq
Assay category
222
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
75
histone modification
74
histone
68
control
45
broad histone mark
29
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
174
August, 2017
58
October, 2018
51
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
January, 2018
1
March, 2019
Available data
1716
bam
1604
bigWig
958
bed narrowPeak
937
tsv
560
bigBed narrowPeak
380
fastq
212
bed broadPeak
208
bed bed3+
187
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
374
Homo sapiens
Biosample type
427
cell line
407
primary cell
376
tissue
141
in vitro differentiated cells
4
stem cell
Organ
212
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
380
AMP
Genome assembly (visualization)
296
hg19
282
GRCh38
1
hg18
Lab
354
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
month_released!
May, 2020
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
GRO-seq
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
15
2
1
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stem cell
hESC
3
1
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