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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
832
ChIP-seq
576
total RNA-seq
246
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
28
snATAC-seq
24
pCHi-C
16
Hi-C
14
small RNA-seq
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
2
RNA microarray
2
RRBS
Assay category
832
DNA binding
764
Transcription
454
DNA accessibility
16
3D chromatin structure
9
DNA methylation
Target of assay
594
histone modification
593
histone
311
narrow histone mark
282
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
223
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
66
May, 2022
53
July, 2019
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
22
October, 2017
19
April, 2020
19
November, 2018
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1400
bam
1290
bigWig
962
bed narrowPeak
611
tsv
550
bigBed narrowPeak
333
fastq
229
tagAlign
209
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
68
txt
64
xls
23
bed bedMethyl
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2098
Homo sapiens
Biosample type
2105
tissue
993
primary cell
564
cell line
279
in vitro differentiated cells
9
stem cell
Organ
498
pancreas
359
liver
306
heart
290
kidney
264
brain
132
blood vessel
132
vasculature
115
limb
connective tissue
100
adipose tissue
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2008
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1356
GRCh38
1255
hg19
Lab
1753
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
files.file_type!
bigBed bedMethyl
month_released!
February, 2021
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2105 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
RNA microarray
RRBS
tissue
islet of Langerhans
70
292
68
1
6
7
4
3
1
4
liver
145
167
20
2
1
1
1
3
kidney
27
49
75
13
59
6
1
1
heart left ventricle
35
3
2
3
18
1
1
2
left cardiac atrium
40
1
18
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