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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
66
ATAC-seq
34
ChIP-seq
16
WGBS
9
RRBS
Assay category
242
DNA accessibility
34
DNA binding
25
DNA methylation
Target of assay
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
64
August, 2021
30
August, 2017
15
November, 2018
14
July, 2019
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1906
bam
1771
bigWig
1076
tsv
983
bed narrowPeak
560
bigBed narrowPeak
376
fastq
237
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
296
Homo sapiens
Biosample type
301
tissue
60
cell line
58
primary cell
1
in vitro differentiated cells
Organ
133
kidney
48
musculature of body
37
brain
37
limb
34
heart
25
pancreas
18
ureter
6
blood vessel
6
vasculature
5
adipose tissue
5
connective tissue
4
artery
4
liver
3
eye
3
spleen
2
nerve
1
pericardium
Project
301
AMP
Genome assembly (visualization)
270
GRCh38
204
hg19
Lab
235
AMP-T2D consortium
64
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
301 results
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DNase-seq
ATAC-seq
ChIP-seq
WGBS
RRBS
tissue
kidney
13
64
1
heart
18
1
brain
14
3
1
muscle of arm
17
skeletal muscle tissue
13
2
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