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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
DNase-seq
33
ChIP-seq
2
ATAC-seq
Assay category
176
DNA accessibility
33
DNA binding
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
Date released
162
June, 2019
24
August, 2017
8
November, 2018
6
November, 2017
4
October, 2017
4
October, 2019
1
March, 2019
Available data
1408
bam
1290
bigWig
970
bed narrowPeak
619
tsv
550
bigBed narrowPeak
333
fastq
229
tagAlign
209
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
0
tar
Organism
204
Homo sapiens
Biosample type
209
tissue
62
cell line
43
primary cell
Organ
68
kidney
45
musculature of body
36
brain
36
limb
27
heart
19
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
connective tissue
3
eye
3
liver
2
nerve
1
spleen
Project
209
AMP
Genome assembly (visualization)
192
hg19
188
GRCh38
Lab
207
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
209 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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