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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
531
ChIP-seq
252
ATAC-seq
180
single cell RNA-seq
142
DNase-seq
87
RNA microarray
28
snATAC-seq
26
WGBS
25
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
531
DNA binding
426
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
578
histone modification
577
histone
narrow histone mark
268
broad histone mark
170
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
233
August, 2017
229
August, 2021
166
May, 2020
131
June, 2019
120
July, 2018
95
February, 2023
77
May, 2019
72
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
57
October, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
May, 2024
22
February, 2020
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1563
bam
1426
bigWig
1069
tsv
639
bed narrowPeak
382
bigBed narrowPeak
348
fastq
163
bed bed3+
161
bed broadPeak
157
txt
140
bigBed broadPeak
127
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2339
Homo sapiens
Biosample type
2345
tissue
972
primary cell
642
cell line
339
in vitro differentiated cells
9
stem cell
Organ
534
connective tissue
476
adipose tissue
472
pancreas
317
liver
289
kidney
275
heart
158
bone element
151
brain
115
blood vessel
115
vasculature
limb
73
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2250
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1524
GRCh38
1433
hg19
Lab
2008
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
organ_slims!
limb
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2345 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
34
68
6
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
1
2
3
1
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
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