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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
WGBS
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
19
RRBS
1
whole genome sequencing assay
Assay category
77
DNA methylation
60
DNA accessibility
52
Transcription
1
DNA sequencing
Date released
134
May, 2022
23
July, 2019
19
September, 2020
7
November, 2018
6
August, 2017
1
August, 2021
Available data
3381
bam
3165
bigWig
1806
bed narrowPeak
1600
tsv
1355
fastq
1039
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
157
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
190
Homo sapiens
Biosample type
163
primary cell
25
tissue
2
cell line
Organ
86
epithelium
86
pancreas
8
heart
4
kidney
4
liver
4
musculature of body
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
153
HPAP
37
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
153
Klaus Kaestner, Upenn
36
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
organ_slims!
skeleton
BIOSAMPLE
ASSAY
190 results
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WGBS
single cell RNA-seq
ATAC-seq
snATAC-seq
RRBS
whole genome sequencing assay
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
1
+ See 9 more…
tissue
heart left ventricle
2
1
pancreas
2
1
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
cell line
HepG2
1
1
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