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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
1
ATAC-seq
Assay category
28
DNA binding
1
DNA accessibility
Target of assay
24
histone
24
histone modification
15
broad histone mark
9
narrow histone mark
4
transcription factor
Date released
19
August, 2017
7
November, 2017
2
October, 2019
1
March, 2019
Available data
2796
bam
2594
bigWig
1739
bed narrowPeak
1253
fastq
1122
tsv
bigBed narrowPeak
374
tagAlign
309
bed broadPeak
275
bigBed broadPeak
245
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
tar
3
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
29
Homo sapiens
Biosample type
21
tissue
6
cell line
2
primary cell
Organ
13
musculature of body
7
pancreas
6
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
connective tissue
Project
29
AMP
Genome assembly (visualization)
28
hg19
Lab
28
AMP-T2D consortium
1
Mark McCarthy, Oxford
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
audit.WARNING.category!
inconsistent assembly
files.file_type!
bigBed narrowPeak
lab.title!
Stephen Parker, UMich
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
cingulate gyrus
1
cell line
HepG2
6
primary cell
endothelial cell of umbilical vein
2
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