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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
2
ATAC-seq
Assay category
29
DNA binding
2
DNA accessibility
Target of assay
25
histone
25
histone modification
15
broad histone mark
10
narrow histone mark
4
transcription factor
Date released
20
August, 2017
7
November, 2017
2
October, 2019
1
March, 2019
1
October, 2017
Available data
3295
bam
3093
bigWig
1742
bed narrowPeak
1600
tsv
1261
fastq
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
284
bigBed broadPeak
257
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
31
Homo sapiens
Biosample type
23
tissue
6
cell line
2
primary cell
Organ
13
musculature of body
8
pancreas
6
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
1
brain
1
connective tissue
Project
31
AMP
Genome assembly (visualization)
30
hg19
1
GRCh38
Lab
29
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
audit.WARNING.category!
inconsistent assembly
files.file_type!
bigBed narrowPeak
month_released!
December, 2017
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
6
primary cell
endothelial cell of umbilical vein
2
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