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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
2
ATAC-seq
Assay category
27
DNA binding
2
DNA accessibility
Target of assay
23
histone
23
histone modification
15
broad histone mark
8
narrow histone mark
4
transcription factor
Date released
19
August, 2017
6
November, 2017
2
October, 2019
1
March, 2019
1
October, 2017
Available data
2554
bam
2375
bigWig
1537
bed narrowPeak
1233
fastq
1096
tsv
bigBed narrowPeak
264
bed broadPeak
256
tagAlign
238
bigBed broadPeak
212
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
5
bed bed3
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
29
Homo sapiens
Biosample type
21
tissue
6
cell line
2
primary cell
Organ
13
musculature of body
8
pancreas
6
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
adipose tissue
brain
connective tissue
Project
29
AMP
Genome assembly (visualization)
28
hg19
1
GRCh38
Lab
27
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
audit.WARNING.category!
inconsistent assembly
files.file_type!
bigBed narrowPeak
organ_slims!
brain
connective tissue
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
cell line
HepG2
6
primary cell
endothelial cell of umbilical vein
2
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