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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
7
DNase-seq
2
ATAC-seq
Assay category
11
DNA binding
9
DNA accessibility
Target of assay
11
histone
11
histone modification
7
broad histone mark
4
narrow histone mark
Date released
11
August, 2017
4
June, 2019
2
November, 2018
1
March, 2019
1
October, 2017
1
October, 2019
Available data
688
bam
614
bigWig
463
fastq
417
tsv
213
bed narrowPeak
90
bigBed narrowPeak
80
zippedFastqFolder
28
bed bed3+
20
bed broadPeak
18
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
Organism
15
Homo sapiens
Biosample type
19
tissue
1
cell line
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
20
AMP
Genome assembly (visualization)
17
hg19
13
GRCh38
Lab
18
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
files.file_type!
vcf
month_released!
August, 2020
BIOSAMPLE
ASSAY
20 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
islet of Langerhans
6
2
pancreas
5
2
body of pancreas
4
cell line
Panc1
1
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