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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
112
ChIP-seq
52
single cell RNA-seq
41
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
267
DNA accessibility
112
DNA binding
52
Transcription
41
DNA methylation
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
134
May, 2022
70
November, 2017
39
August, 2017
19
September, 2020
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
November, 2020
Available data
3383
bam
3160
bigWig
1812
bed narrowPeak
tsv
1355
fastq
1038
bigBed narrowPeak
396
tagAlign
319
bed broadPeak
283
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
467
Homo sapiens
Biosample type
212
tissue
200
primary cell
59
cell line
1
in vitro differentiated cells
Organ
102
epithelium
100
pancreas
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
319
AMP
153
HPAP
Genome assembly (visualization)
295
hg19
279
GRCh38
Lab
317
AMP-T2D consortium
153
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
files.file_type!
tsv
month_released!
November, 2020
BIOSAMPLE
ASSAY
472 results
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DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
+ See 21 more…
cell line
HepG2
58
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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