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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
DNase-seq
57
ChIP-seq
Assay category
168
DNA accessibility
57
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
155
June, 2019
55
November, 2017
August, 2017
9
November, 2018
5
October, 2019
1
November, 2020
Available data
2657
bam
2439
bigWig
1504
tsv
1218
bed narrowPeak
1013
fastq
793
bigBed narrowPeak
231
bed broadPeak
225
bigBed broadPeak
196
bed bed3+
168
tagAlign
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
225
Homo sapiens
Biosample type
140
tissue
53
cell line
32
primary cell
Organ
78
kidney
57
liver
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
225
AMP
Genome assembly (visualization)
210
GRCh38
202
hg19
Lab
225
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
8
inconsistent control read length
audit.WARNING.category!
inconsistent assembly
month_released!
August, 2017
organ_slims!
limb
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
225 results
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DNase-seq
ChIP-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 33 more…
cell line
HepG2
52
Panc1
1
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 17 more…
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