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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
DNase-seq
9
ChIP-seq
Assay category
170
DNA accessibility
9
DNA binding
Target of assay
12
histone
12
histone modification
7
broad histone mark
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
155
June, 2019
November, 2017
9
August, 2017
9
November, 2018
5
October, 2019
1
November, 2020
Available data
2522
bam
2345
bigWig
1593
tsv
1024
bed narrowPeak
932
fastq
537
bigBed narrowPeak
223
bed bed3+
198
bed broadPeak
179
bigBed broadPeak
170
tagAlign
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
179
Homo sapiens
Biosample type
140
tissue
37
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
limb
33
musculature of body
32
brain
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
9
connective tissue
7
pancreas
5
liver
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
179
AMP
Genome assembly (visualization)
175
GRCh38
156
hg19
Lab
179
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
month_released!
November, 2017
organ_slims!
limb
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
179 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 33 more…
primary cell
skeletal muscle myoblast
1
7
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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