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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
3
single cell RNA-seq
1
whole genome sequencing assay
Assay category
64
DNA accessibility
3
Transcription
1
DNA sequencing
Date released
65
August, 2021
1
February, 2021
1
November, 2018
1
September, 2018
Available data
3389
bam
3165
bigWig
1814
bed narrowPeak
tsv
1355
fastq
1039
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
68
Homo sapiens
Biosample type
65
tissue
2
primary cell
1
cell line
Organ
64
kidney
2
liver
Project
68
AMP
Genome assembly (visualization)
64
GRCh38
Lab
64
Katalin Susztak, Upenn
3
AMP-T2D consortium
1
Bing Ren, UCSD
audit.WARNING.category!
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
single cell RNA-seq
whole genome sequencing assay
tissue
kidney
64
liver
1
primary cell
pancreatic cell
2
cell line
HepG2
1
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