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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
200
DNA binding
15
DNA methylation
6
DNA accessibility
Target of assay
131
histone modification
130
histone
76
broad histone mark
53
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
675
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
221
August, 2017
214
June, 2019
141
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
117
fastq
112
bam
111
bigWig
91
bed narrowPeak
68
tagAlign
28
bed broadPeak
23
bigBed narrowPeak
14
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
221
Homo sapiens
Biosample type
137
tissue
68
in vitro differentiated cells
16
primary cell
Organ
pancreas
125
connective tissue
57
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
221
AMP
Genome assembly (visualization)
115
hg19
95
GRCh38
Lab
221
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
month_released!
November, 2020
organ_slims!
pancreas
skeleton
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
13
1
2
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