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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
101
ChIP-seq
5
ATAC-seq
5
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
201
DNA accessibility
101
DNA binding
5
DNA methylation
1
Transcription
Target of assay
65
transcription factor
25
RNA binding protein
19
histone
19
histone modification
17
control
16
recombinant protein
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
Date released
715
February, 2021
408
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
313
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
307
bam
289
bigWig
284
bed narrowPeak
284
bigBed narrowPeak
197
bed bed3+
195
bed broadPeak
195
bigBed broadPeak
90
fastq
5
bed bedMethyl
5
bigBed bedMethyl
1
csv
Organism
308
Homo sapiens
Biosample type
186
tissue
61
cell line
61
primary cell
Organ
81
kidney
55
liver
43
musculature of body
35
heart
32
brain
32
limb
25
epithelium
22
pancreas
19
connective tissue
18
ureter
15
blood
15
bodily fluid
spleen
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
308
AMP
Genome assembly (visualization)
290
GRCh38
261
hg19
Lab
308
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
organ_slims!
spleen
BIOSAMPLE
ASSAY
308 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 21 more…
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