Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
58
total RNA-seq
2
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
58
Transcription
3
DNA accessibility
2
3D chromatin structure
2
DNA binding
Target of assay
15
histone
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
142
February, 2021
6
October, 2019
1
March, 2020
1
May, 2021
Available data
84
txt
63
bam
61
bigWig
58
tsv
3
bed narrowPeak
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
150
Homo sapiens
Biosample type
142
tissue
8
primary cell
Organ
794
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
AMP
1
T1D
Genome assembly (visualization)
63
hg19
60
GRCh38
Lab
149
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
audit.WARNING.category!
inconsistent assembly
organ_slims!
skeleton
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
150 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
bone element
84
bone tissue
58
primary cell
endothelial cell of umbilical vein
2
2
2
1
megakaryocyte
1
Download