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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
154
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
154
DNA binding
25
DNA accessibility
5
DNA methylation
Target of assay
69
histone modification
68
histone
46
control
43
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
53
August, 2017
48
December, 2017
40
May, 2022
8
July, 2019
7
November, 2018
6
October, 2019
2
March, 2020
1
February, 2020
1
February, 2021
Available data
287
bam
264
bigWig
154
tsv
112
bed narrowPeak
82
fastq
70
tagAlign
48
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
359
Homo sapiens
Biosample type
374
cell line
359
tissue
15
in vitro differentiated cells
14
primary cell
Organ
547
connective tissue
497
pancreas
488
adipose tissue
359
liver
310
heart
299
kidney
265
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
359
AMP
Genome assembly (visualization)
266
hg19
237
GRCh38
Lab
319
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
audit.WARNING.category!!
inconsistent control read length
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
359 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
144
20
2
3
1
1
1
1
right lobe of liver
3
10
1
2
1
2
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