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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
86
ChIP-seq
3
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
86
DNA binding
5
DNA accessibility
Target of assay
58
histone
58
histone modification
29
broad histone mark
29
narrow histone mark
21
control
7
transcription factor
2
RNA binding protein
Date released
180
August, 2017
157
July, 2018
104
May, 2022
87
October, 2019
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
52
October, 2018
39
April, 2018
38
February, 2021
36
June, 2019
19
September, 2020
14
March, 2020
11
July, 2019
11
September, 2017
10
November, 2020
9
May, 2019
8
January, 2021
7
August, 2020
7
November, 2018
5
March, 2019
5
October, 2017
4
August, 2021
4
February, 2020
3
August, 2018
3
October, 2022
1
August, 2022
1
June, 2018
Available data
160
bam
160
fastq
151
bigWig
89
tsv
41
bed narrowPeak
19
bed bed3+
16
tagAlign
13
bigBed narrowPeak
12
bed broadPeak
Organism
173
Homo sapiens
Biosample type
143
tissue
37
primary cell
Organ
180
pancreas
119
connective tissue
57
adipose tissue
53
liver
26
musculature of body
25
epithelium
0
limb
Project
180
AMP
Genome assembly (visualization)
151
hg19
144
GRCh38
Lab
180
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
180 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
42
1
1
pancreas
10
primary cell
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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