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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
23
ChIP-seq
8
ATAC-seq
4
DNase-seq
3
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
23
DNA binding
13
DNA accessibility
3
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
4
control
4
transcription factor
Date released
66
February, 2021
21
October, 2019
3
July, 2019
2
June, 2019
1
March, 2020
Available data
90
bam
76
bigWig
54
tsv
27
bed narrowPeak
15
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
1
hdf5
1
tar
Organism
93
Homo sapiens
Biosample type
tissue
66
cell line
27
primary cell
Organ
404
liver
352
epithelium
285
pancreas
131
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
34
embryo
22
vein
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
93
AMP
Genome assembly (visualization)
85
hg19
80
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
award.project!
HPAP
biosample_type!
tissue
organ_slims!
brain
BIOSAMPLE
ASSAY
93 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
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