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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
59
total RNA-seq
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
190
DNA binding
183
DNA accessibility
163
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
148
histone
148
histone modification
78
broad histone mark
70
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
55
June, 2019
55
May, 2021
54
August, 2017
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
424
bam
418
bigWig
235
fastq
206
bed narrowPeak
168
tsv
108
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
554
Homo sapiens
Biosample type
2674
tissue
625
cell line
554
primary cell
377
in vitro differentiated cells
6
stem cell
Organ
250
epithelium
190
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
554
AMP
324
HPAP
T1D
1
ITG
Genome assembly (visualization)
440
hg19
340
GRCh38
Lab
519
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
award.project!
T1D
BIOSAMPLE
ASSAY
554 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
11
7
12
10
pancreatic alpha cell
11
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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