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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
151
ATAC-seq
99
single cell RNA-seq
59
total RNA-seq
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
183
DNA accessibility
160
Transcription
158
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
148
histone
148
histone modification
78
broad histone mark
70
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
52
May, 2021
48
July, 2018
47
June, 2019
43
April, 2018
41
August, 2017
31
October, 2019
28
July, 2019
12
February, 2023
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
408
bigWig
392
bam
219
fastq
206
bed narrowPeak
165
tsv
108
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
14
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
519
Homo sapiens
Biosample type
2487
tissue
542
cell line
519
primary cell
340
in vitro differentiated cells
5
stem cell
Organ
229
epithelium
178
pancreas
35
connective tissue
33
kidney
33
vasculature
28
blood vessel
20
vein
15
brain
13
liver
12
musculature of body
11
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
519
AMP
324
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
430
hg19
337
GRCh38
Lab
487
AMP-T2D consortium
32
Kyle Gaulton, UCSD
Audit category:
44
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
month_released!
January, 2021
target.investigated_as!
control
BIOSAMPLE
ASSAY
519 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
30
2
2
pancreatic beta cell
5
7
12
10
pancreatic alpha cell
5
6
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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