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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
70
single cell RNA-seq
40
total RNA-seq
23
ATAC-seq
18
DNase-seq
6
RRBS
4
Hi-C
1
FAIRE-seq
Assay category
110
Transcription
88
DNA binding
42
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
62
histone
62
histone modification
31
broad histone mark
31
narrow histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
61
September, 2018
33
April, 2018
33
July, 2018
33
October, 2019
25
August, 2017
20
June, 2019
13
July, 2019
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
2
October, 2018
1
June, 2018
1
March, 2020
Available data
238
bam
217
bigWig
165
fastq
110
tsv
102
bed narrowPeak
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
250
Homo sapiens
Biosample type
250
primary cell
75
cell line
23
in vitro differentiated cells
16
tissue
Organ
250
epithelium
190
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
0
esophagus
Project
250
AMP
152
HPAP
Genome assembly (visualization)
220
hg19
211
GRCh38
Lab
250
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
Audit category:
21
missing controlled_by
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
FAIRE-seq
primary cell
pancreatic beta cell
11
12
10
7
pancreatic alpha cell
11
12
10
6
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
endothelial cell of umbilical vein
17
2
2
1
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