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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
955
total RNA-seq
826
ChIP-seq
199
ATAC-seq
173
DNase-seq
118
single cell RNA-seq
25
WGBS
23
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1089
Transcription
826
DNA binding
384
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
566
histone modification
565
histone
301
narrow histone mark
264
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
395
February, 2021
279
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
73
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
48
December, 2017
40
May, 2024
40
November, 2019
39
May, 2021
34
February, 2023
33
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1746
bam
1636
bigWig
1004
tsv
868
bed narrowPeak
493
bigBed narrowPeak
371
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
69
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2375
Homo sapiens
Biosample type
2383
tissue
559
cell line
517
primary cell
377
in vitro differentiated cells
6
stem cell
Organ
547
connective tissue
488
adipose tissue
470
pancreas
360
liver
313
heart
265
brain
252
kidney
bone element
133
blood vessel
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2383
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1680
GRCh38
1607
hg19
Lab
2124
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
9
audit script error
7
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
organ_slims!
bone element
vasculature
BIOSAMPLE
ASSAY
2383 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
285
69
57
1
6
4
3
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
144
20
2
1
3
1
1
1
1
kidney
49
27
75
13
17
1
1
6
1
heart left ventricle
3
35
2
3
18
4
1
1
1
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