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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
6
WGBS
5
RRBS
3
DNase-seq
1
ATAC-seq
Assay category
147
DNA binding
11
DNA methylation
4
DNA accessibility
Target of assay
99
histone
99
histone modification
58
broad histone mark
40
narrow histone mark
30
transcription factor
18
control
6
RNA binding protein
1
chromatin remodeller
Date released
641
February, 2021
289
October, 2019
280
August, 2021
212
June, 2019
186
May, 2021
162
August, 2017
118
May, 2019
105
February, 2023
102
May, 2020
92
July, 2019
91
November, 2017
80
April, 2019
47
March, 2020
40
May, 2024
37
February, 2018
34
December, 2018
28
November, 2018
25
January, 2019
23
February, 2020
23
October, 2018
20
December, 2017
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
8
January, 2018
6
November, 2019
6
November, 2020
5
December, 2019
2
June, 2018
2
May, 2022
1
August, 2018
1
October, 2022
1
September, 2018
Available data
88
bigWig
84
fastq
81
bam
68
bed narrowPeak
49
tagAlign
29
bed broadPeak
18
bigBed narrowPeak
15
bigBed broadPeak
7
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
Organism
162
Homo sapiens
Biosample type
83
tissue
62
in vitro differentiated cells
17
primary cell
Organ
pancreas
119
connective tissue
57
adipose tissue
liver
26
musculature of body
25
epithelium
Project
162
AMP
Genome assembly (visualization)
90
hg19
71
GRCh38
Lab
162
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
organ_slims!
liver
pancreas
BIOSAMPLE
ASSAY
162 results
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Clear Filters
ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
adipose tissue
2
3
subcutaneous adipose tissue
1
in vitro differentiated cells
adipocyte
61
1
primary cell
skeletal muscle myoblast
14
1
2
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