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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
DNase-seq
64
ChIP-seq
Assay category
198
DNA accessibility
64
DNA binding
Target of assay
47
transcription factor
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
51
November, 2017
14
August, 2017
9
November, 2018
October, 2019
1
November, 2020
Available data
2816
bam
2668
bigWig
1461
bed narrowPeak
1454
tsv
1178
fastq
926
bigBed narrowPeak
299
bed broadPeak
298
tagAlign
262
bigBed broadPeak
238
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
17
hic
15
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
3
cool
3
tar
1
bedpe
1
vcf
Organism
262
Homo sapiens
Biosample type
172
tissue
45
cell line
45
primary cell
in vitro differentiated cells
Organ
78
kidney
50
liver
38
brain
33
musculature of body
32
limb
30
heart
18
epithelium
18
ureter
11
vasculature
8
connective tissue
7
blood vessel
6
pancreas
4
eye
2
adipose tissue
2
artery
1
spleen
Project
262
AMP
Genome assembly (visualization)
248
GRCh38
239
hg19
Lab
262
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.WARNING.category!
inconsistent control read length
biosample_type!
in vitro differentiated cells
month_released!
October, 2019
organ_slims!
small intestine
BIOSAMPLE
ASSAY
262 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
45
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
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